Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs55809157 chr8:13971504 G/A 0.000152 111 15.7 13.15 0 KM Plot
LAML rs55830064 chr16:50032641 G/A 9.88E-5 110 16.3 7.17 0 KM Plot
LAML rs55834706 chr2:240527069 T/G 1.67E-5 109 13.2 23.3 0 KM Plot
LAML rs55835876 chr19:12533041 C/T 4.1E-6 110 5.62 22.37 13.1 KM Plot
LAML rs55864937 chr2:46886510 T/G 0.000123 109 13.15 17.23 1.02 KM Plot
LAML rs55968387 chr19:16246842 G/A 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs56056712 chr19:12537391 A/G 1.16E-5 109 6.13 22.37 13.1 KM Plot
LAML rs56063253 chr17:58184138 A/G 0.000123 111 15.17 19.23 0 KM Plot
LAML rs56064330 chr19:33916332 G/A 3.29E-5 107 19.23 16.23 2.02 KM Plot
LAML rs56094035 chr8:8551622 G/A 5.21E-5 111 17.28 16.23 4.08 KM Plot
LAML rs56273615 chr2:240561645 C/T 0.00015 108 13.1 33.47 0 KM Plot
LAML rs56294345 chr13:100088088 C/G 5.58E-5 111 17.23 10.67 1.02 KM Plot
LAML rs56307098 chr19:16225624 C/T 0.000133 107 16.2 8.13 0 KM Plot
LAML rs56358408 chr19:12537397 C/T 1.16E-5 109 6.13 22.37 13.1 KM Plot
LAML rs56404478 chr1:95374403 T/A 7.14E-5 110 12.65 23.3 0 KM Plot